I like OwnCloud as well and use it for all my dev stuff, keeping things synced between desktop and laptop (and my hosted server).
The one issue I've had was sometimes if it tried to sync while I was working in my IDE (gamemaker studio), somewhere between saving and compiling it would lose sync and want to redo the whole folder. I tended to pause sync until I finished working. Could have been a bug that was since fixed, but I still do it just in case.
The one issue I've had was sometimes if it tried to sync while I was working in my IDE (gamemaker studio), somewhere between saving and compiling it would lose sync and want to redo the whole folder. I tended to pause sync until I finished working. Could have been a bug that was since fixed, but I still do it just in case.