I've been using https://github.com/whipper-team/whipper to digitize CD's, and it supports identifying Hidden Track One Audio (HTOA) when it exists and is not blank.
Add in MusicBrainz Picard and Navidrome and you have a really nice solution.
Whipper user here also. If you've not yet encountered it, as it's not as prevalent in repos as Whipper, Cyanrip is always very much worth a look and has come on in leaps and bounds, with recent updates adding (non compliant) .cue sheet support.
Add in MusicBrainz Picard and Navidrome and you have a really nice solution.