Agreement states that we're independent contractors, but scope of work section tells:
As a Software Engineer at %company name% you will be developing
applications for the %company name% Platform.
Your starting date will be %date%. You will work as a full-time member
of the team from %my location%. Full-time member assumed
to be working five days in a week (Monday till Friday), 8 hours a day.
Depending on what you did and the conditions of how were supposed to do your work, you may actually be classified as an employee. Even if you were given a 1099 if your in the USA depending on what you actually did or certain requirements from your employer it might have made you a W-2 employee.
If you were improperly classified the employer owes back taxes, medicare, social security and a whole range of other payments to you and to the state and federal government. If this is the case make a call to the IRS they love hearing stories like these, they will send the Uncle Sam team out to help get some clarification on the matter.